Index

A

addEdgeRecord (C++ function)

areaPolygon3D (C++ function), [1]

B

bendingOperator (C++ struct) bendingOperator::axis (C++ member) bendingOperator::bendingOperator (C++ function) bendingOperator::cosTheta (C++ member) bendingOperator::sinTheta (C++ member) BundleType (C++ enum)

BundleType::bdl_COUNT_LAST (C++ enumerator) BundleType::bdl_multiCollision (C++ enumerator) BundleType::bdl_Ncollision (C++ enumerator) BundleType::bdl_noZip (C++ enumerator) BundleType::bdl_simple (C++ enumerator) BundleType::bdl_sticky (C++ enumerator) BundleTypeText (C++ member), [1]

C

Cartesian (C++ class) Cartesian::Cartesian (C++ function) Cartesian::getOrderParameters (C++ function) Cartesian::getOrderParametersRawCylinder (C++ function) Cartesian::getOrderParametersRawFlat (C++ function) Cartesian::getTrajectoryCoordinates (C++ function) Cartesian::intersectionAngle (C++ function) Cartesian::makeIntersectionList (C++ function) Cartesian::outputOrderHeatMap (C++ function) Cartesian::outputSnapshot (C++ function) Cartesian::outputSnapshotOffset (C++ function) Cartesian::randomSurfaceVector (C++ function) Cartesian::translateVector (C++ function) checkEular (C++ function), [1] checkSurfaceOrientation (C++ function), [1] CLOCK_POLLING_INTERVAL (C++ member) CollisionType (C++ enum) CollisionType::ct_crossover (C++ enumerator) CollisionType::ct_inducedCatastrophe (C++ enumerator) CollisionType::ct_zipper (C++ enumerator)

CompactList (C++ class) CompactList::CompactList (C++ function) CompactList::create (C++ function), [1], [2], [3] CompactList::ElementAddress (C++ function) CompactList::elements (C++ member) CompactList::InsertElement (C++ function) CompactList::MemPool (C++ type) CompactList::operator[] (C++ function) CompactList::PoolTag (C++ struct) CompactList::remove (C++ function) CompactList::removeAll (C++ function) CompactList::RemoveElement (C++ function) CompactList::size (C++ function) CompactList::~CompactList (C++ function) CompactListItem (C++ class) CompactListItem::CompactListItem (C++ function) CompactListItem::index (C++ member) CompactListItem::~CompactListItem (C++ function) connectWithGlobe (C++ function), [1] correctOrientation (C++ function) CROSS_SEV (C macro)

D

deleteFirst (C++ function) DeterministicEvent (C++ class) DeterministicEvent::eventTimeDist (C++ member) DeterministicEvent::global_type (C++ member) DeterministicEvent::infoIdx (C++ member) DeterministicEvent::operator< (C++ function) DeterministicEvent::tag (C++ member) DeterministicEventType (C++ enum) DeterministicEventType::ev_backtrack (C++ enumerator) DeterministicEventType::ev_collision (C++ enumerator) DeterministicEventType::ev_disappear (C++ enumerator) DeterministicEventType::ev_end_of_segment (C++ enumerator) DeterministicEventType::ev_none (C++ enumerator) DeterministicEventType::ev_wall (C++ enumerator) DeterministicQueue (C++ class) DeterministicQueue::advanceTime (C++ function) DeterministicQueue::currentBase (C++ member) DeterministicQueue::currentPos (C++ function) DeterministicQueue::DeterministicQueue (C++ function) DeterministicQueue::distanceTimeConversionFunction (C++ member) DeterministicQueue::empty (C++ function) DeterministicQueue::firstEventTime (C++ function) DeterministicQueue::flush (C++ function) DeterministicQueue::pop (C++ function) DeterministicQueue::progression (C++ function) DeterministicQueue::pushDeterministic (C++ function) DeterministicQueue::pushGlobal (C++ function) DeterministicQueue::queue (C++ member) DeterministicQueue::storeTime (C++ function) DeterministicQueue::system (C++ member) DeterministicQueue::timeDistanceConversionFunction (C++ member) DeterministicQueue::valueCache (C++ member) Direction (C++ enum) Direction::backward (C++ enumerator) Direction::forward (C++ enumerator) DirectionTypeText (C++ member), [1]

display (C++ function) DLBaseItem (C++ class) DLBaseItem::next (C++ function) DLBaseItem::nextElement (C++ member) DLBaseItem::previous (C++ function) DLBaseItem::previousElement (C++ member) DLBaseItem::~DLBaseItem (C++ function) DLContainerItem (C++ class) DLContainerItem::containerPtr (C++ function) DLContainerItem::data (C++ member) DLContainerItem::dataPtr (C++ function) DLContainerItem::DLContainerItem (C++ function), [1], [2], [3] DLContainerItem::next (C++ function) DLContainerItem::nextElement (C++ member) DLContainerItem::previous (C++ function) DLContainerItem::previousElement (C++ member) DLContainerItem::~DLContainerItem (C++ function) DLList (C++ class) DLList::create (C++ function), [1], [2], [3] DLList::DLList (C++ function) DLList::first (C++ function) DLList::firstElement (C++ member) DLList::import (C++ function) DLList::importSet (C++ function) DLList::last (C++ function) DLList::lastElement (C++ member) DLList::linkElement (C++ function) DLList::MemPool (C++ type) DLList::next (C++ function) DLList::numElements (C++ member) DLList::PoolTag (C++ struct) DLList::previous (C++ function) DLList::remove (C++ function) DLList::removeAll (C++ function) DLList::size (C++ function) DLList::unlinkElement (C++ function) DLList::~DLList (C++ function)

E

Edge (C++ class) Edge::A (C++ member) Edge::b (C++ member) Edge::dir (C++ member) Edge::dir2D (C++ member) Edge::edgAngle (C++ member) Edge::edgAngNorm (C++ member) Edge::edgBendAngle (C++ member) Edge::Edge (C++ function) Edge::excludePoint (C++ member) Edge::excludePointMap (C++ member) Edge::midPoint (C++ member) Edge::orientation (C++ member) Edge::orientationMap (C++ member) Edge::pCat (C++ member) Edge::xyRotationAngle (C++ member) edge_sort (C++ function) edgeDescriptors (C++ function), [1] edgeOfficer (C++ class) edgeOfficer::cur (C++ member) edgeOfficer::edgefaceStore (C++ member) edgeOfficer::edgeOfficer (C++ function) edgeOfficer::edgeSpStore (C++ member) edgeOfficer::elements (C++ member) edgeOfficer::meanEdgAngle (C++ member) edgeRecord (C++ struct) edgeRecord::cell_id (C++ member) edgeRecord::edge_index (C++ member)

edgeRecord::key (C++ member) edgeRecord::next (C++ member) Eigen (C++ type) eigen_decomposition (C++ function), [1] elementList (C++ class) elementList::edge3DAngle (C++ member) elementList::elementList (C++ function) elementList::intersectionByPlane (C++ member) elementList::length (C++ member) elementList::midPoint (C++ member) elementList::nodes (C++ member) elementList::sharedEdge (C++ member) elementList::sharedElement (C++ member) establishPBC (C++ function), [1] EVENT_GRANULARITY (C++ member) EventDescriptor (C++ class) EventDescriptor::clear (C++ function) EventDescriptor::distanceScaleFactor (C++ member) EventDescriptor::EventDescriptor (C++ function) EventDescriptor::index (C++ member) EventDescriptor::mt (C++ member) EventDescriptor::pushOnQueue (C++ function) EventDescriptor::queue (C++ member) EventDescriptor::reinitialize (C++ function) EventDescriptor::tag (C++ member) EventDescriptor::type (C++ member) EventDescriptor::~EventDescriptor (C++ function) EventDescriptorIndex (C++ type) EventTrackingTag (C++ type)

F

find_connectivity (C++ function)

findNorm (C++ function)

G

Geometry (C++ class) Geometry::area (C++ member) Geometry::areainMesh (C++ member) Geometry::areaPPB (C++ member) Geometry::callTranslator (C++ function) Geometry::createAndLinkTrajectory (C++ function) Geometry::createTrajectory (C++ function) Geometry::elementMax (C++ member) Geometry::extendTrajectory (C++ function) Geometry::Geometry (C++ function) Geometry::getOrderParameters (C++ function) Geometry::globalVertex (C++ member) Geometry::integrityCheck (C++ function) Geometry::nucleousPosition (C++ member) Geometry::objectCM (C++ member) Geometry::objectPA (C++ member) Geometry::opticalLength (C++ function) Geometry::outputOrderHeatMap (C++ function)

Geometry::outputSnapshot (C++ function) Geometry::patchArea (C++ member) Geometry::ppb (C++ member) Geometry::ppbEdgeList (C++ member) Geometry::randomSurfaceVector (C++ function) Geometry::regions (C++ member) Geometry::RegionsIndex (C++ member) Geometry::system (C++ member) Geometry::Trajectory::nextTrajectory (C++ function) Geometry::trajectoryCount (C++ function) Geometry::~Geometry (C++ function) GeometryTypeText (C++ member) GlobalEventType (C++ enum) GlobalEventType::measure (C++ enumerator) GlobalEventType::parameter_change (C++ enumerator) GlobalEventType::signalPPB (C++ enumerator) GlobalEventType::snapshot (C++ enumerator) GlobalEventType::status (C++ enumerator) GlobalEventType::stop (C++ enumerator)

H

hypot2 (C++ function)

I

Image3dTo2D (C++ function), [1] iniEdgeRecord (C++ function) InteractionType (C++ enum) InteractionType::int_catFirst (C++ enumerator) InteractionType::int_COUNT_LAST (C++ enumerator) InteractionType::int_zipFirst (C++ enumerator) InteractionTypeText (C++ member), [1]

intersectingPolygon (C++ function), [1] Intersection (C++ class) Intersection::mirror (C++ member) Intersection::occupancy (C++ member) Intersection::occupiedListPtr (C++ member) Intersection::otherTrajectory (C++ member) INTERSECTION_GRANULARITY (C++ member) IntersectionItr (C++ type)

L

LambertW (C++ function) linePlaneIntersect (C++ function), [1] loadParam (C++ function)

loadParamEnumText (C++ function) loadParamMaps (C++ function) loadParamRandom (C++ function)

M

main (C++ function) makeGraph (C++ function), [1] MAX (C macro) MAX_HISTORY_SIZE (C++ member) MAXBINOM (C++ member) Measurement (C++ class) Measurement::averageLength (C++ member) Measurement::crossoverCount (C++ member) Measurement::G_effAdjust (C++ member) Measurement::growingNumber (C++ member) Measurement::inducedCatastropheCount (C++ member) Measurement::intersectionSeveringCount (C++ member) Measurement::invalidDEventCount (C++ member) Measurement::lengthDensity (C++ member) Measurement::lengthSeveringCount (C++ member) Measurement::numberOfMTs (C++ member) Measurement::occupiedIntersectionCount (C++ member) Measurement::opticalDensity (C++ member) Measurement::order (C++ member) Measurement::segments (C++ member) Measurement::segmentsPerMT (C++ member) Measurement::sEventCount (C++ member) Measurement::shrinkingNumber (C++ member) Measurement::time (C++ member) Measurement::trajectories (C++ member) Measurement::validDEventCount (C++ member) Measurement::zipperCount (C++ member) MEMORY_POLLING_INTERVAL (C++ member) Microtubule (C++ class) Microtubule::backtrack (C++ function) Microtubule::catastrophe (C++ function) Microtubule::collision (C++ function) Microtubule::crossover (C++ function) Microtubule::disappearEvent (C++ member) Microtubule::endOfSegment (C++ function) Microtubule::handleEvent (C++ function) Microtubule::harakiri (C++ function) Microtubule::integrityCheck (C++ function) Microtubule::length (C++ function) Microtubule::Microtubule (C++ function), [1] Microtubule::minus (C++ member) Microtubule::nucleationTime (C++ member) Microtubule::operator= (C++ function) Microtubule::plus (C++ member) Microtubule::previousUpdateTag (C++ member) Microtubule::rescue (C++ function) Microtubule::segments (C++ member) Microtubule::setDisappearEvent (C++ function) Microtubule::sever (C++ function) Microtubule::severAtCross (C++ function) Microtubule::splitSegmentAtTrajPos (C++ function) Microtubule::system (C++ member) Microtubule::translatePositionMT2Segment (C++ function) Microtubule::type (C++ member) Microtubule::updateLength (C++ function) Microtubule::wall (C++ function) Microtubule::zipper (C++ function) Microtubule::~Microtubule (C++ function)

MICROTUBULE_GRANULARITY (C++ member) MIN_HISTORY_SIZE (C++ member) MTRand (C++ class) MTRand::hash (C++ function) MTRand::hiBit (C++ function) MTRand::initialize (C++ function) MTRand::left (C++ member) MTRand::load (C++ function) MTRand::loBit (C++ function) MTRand::loBits (C++ function) MTRand::mixBits (C++ function) MTRand::MTRand (C++ function), [1], [2] MTRand::operator() (C++ function) MTRand::operator<< (C++ function) MTRand::operator>> (C++ function) MTRand::PhonyNameDueToError::M (C++ enumerator) MTRand::PhonyNameDueToError::N (C++ enumerator) MTRand::PhonyNameDueToError::SAVE (C++ enumerator) MTRand::pNext (C++ member) MTRand::rand (C++ function), [1] MTRand::rand53 (C++ function) MTRand::randDblExc (C++ function), [1] MTRand::randExc (C++ function), [1] MTRand::randInt (C++ function), [1] MTRand::randNorm (C++ function) MTRand::reload (C++ function) MTRand::save (C++ function) MTRand::seed (C++ function), [1], [2] MTRand::state (C++ member) MTRand::twist (C++ function) MTRand::uint32 (C++ type) MTTip (C++ class) MTTip::advanceIntersection (C++ function) MTTip::determineEvent (C++ function) MTTip::dir (C++ member) MTTip::event (C++ member) MTTip::initialize (C++ function) MTTip::locateIntersection (C++ function) MTTip::mt (C++ member) MTTip::MTTip (C++ function), [1] MTTip::nextCollision (C++ member) MTTip::nextEventPos (C++ member) MTTip::notificationTag (C++ member) MTTip::notifyInsert (C++ function) MTTip::notifyRemove (C++ function) MTTip::operator= (C++ function) MTTip::otherPosition (C++ function) MTTip::position (C++ function) MTTip::regionTag (C++ member) MTTip::segment (C++ function) MTTip::switchTrajectory (C++ function) MTTip::trajectory (C++ member) MTTip::type (C++ function) MTTip::unlinkFromTrajectory (C++ function) MTTip::velocity (C++ member) MTTip::~MTTip (C++ function) MTType (C++ enum) MTType::mt_growing (C++ enumerator) MTType::mt_shrinking (C++ enumerator)

N

n (C macro) NUCLEATION_DISCRETIZATION_STEPS (C++ member) NucleationType (C++ enum)

NucleationType::nuc_COUNT_LAST (C++ enumerator) NucleationType::nuc_isotropic (C++ enumerator) NucleationTypeText (C++ member), [1]

O

OCCUPIED_INTERSECTION_GRANULARITY (C++ member) OccupiedIntersection (C++ class) OccupiedIntersection::intersectionToCut (C++ member) OccupiedIntersection::OccupiedIntersection (C++ function) operator<< (C++ function), [1], [2] operator>> (C++ function) OrderParameters (C++ struct) OrderParameters::C (C++ member) OrderParameters::localOrder (C++ member) OrderParameters::R (C++ member) OrderParameters::Rdirector (C++ member) OrderParameters::Sv (C++ member) OrderParametersRaw (C++ class)

OrderParametersRaw::extractR (C++ function) OrderParametersRaw::localL (C++ member) OrderParametersRaw::localLOpt (C++ member) OrderParametersRaw::localOrder (C++ member) OrderParametersRaw::OrderParametersRaw (C++ function) OrderParametersRaw::Qxx (C++ member) OrderParametersRaw::Qxy (C++ member) OrderParametersRaw::Qxz (C++ member) OrderParametersRaw::Qyy (C++ member) OrderParametersRaw::Qyz (C++ member) OrderParametersRaw::Qzz (C++ member) OrderParametersRaw::Sv (C++ member) orientSurface (C++ function), [1]

P

Parameters (C++ class) Parameters::bundleType (C++ member) Parameters::c0calc (C++ member) Parameters::calcTheoryParameters (C++ function) Parameters::catastrophesEnabled (C++ member) Parameters::catStartAngle (C++ member) Parameters::createSubdir (C++ member) Parameters::crossSeveringEnabled (C++ member) Parameters::crossSeveringStartAngle (C++ member) Parameters::crossSeveringTop (C++ member) Parameters::edgCatMap (C++ member) Parameters::edgeCatastropheEnabled (C++ member) Parameters::edgeCatastropheSmooth (C++ member) Parameters::edgNumber (C++ member) Parameters::faceCatMap (C++ member) Parameters::faceNumber (C++ member) Parameters::geometry (C++ member) Parameters::geometryScaleFactor (C++ member) Parameters::geomParam (C++ member) Parameters::inducedCatastropheFraction (C++ member) Parameters::initialize (C++ function) Parameters::inputDir (C++ member) Parameters::interactionType (C++ member) Parameters::kCat (C++ member) Parameters::kCross (C++ member) Parameters::kNuc (C++ member) Parameters::kRes (C++ member) Parameters::kSev (C++ member) Parameters::magicAngle (C++ member) Parameters::measurementInterval (C++ member) Parameters::memoryLimit (C++ member) Parameters::movieDir (C++ member) Parameters::movieEnabled (C++ member) Parameters::movieFrameInterval (C++ member) Parameters::newParameterFile (C++ member) Parameters::newParameterReadInterval (C++ member) Parameters::nucleationType (C++ member) Parameters::outputDir (C++ member)

Parameters::Parameters (C++ function) Parameters::pCatRegularEdgeMax (C++ member) Parameters::pCatSpecialEdgeMax (C++ member) Parameters::poolDensity (C++ member) Parameters::PPB (C++ member) Parameters::PPBformingTime (C++ member) Parameters::PPBkNucFraction (C++ member) Parameters::proportionalCatastrophes (C++ member) Parameters::readFromFile (C++ function) Parameters::RegionKcatMultiplier (C++ member) Parameters::reinitialize (C++ function) Parameters::restrictedPool (C++ member) Parameters::seed (C++ member) Parameters::severingEnabled (C++ member) Parameters::showMesh (C++ member) Parameters::showOutput (C++ member) Parameters::stopTime (C++ member) Parameters::system (C++ member) Parameters::treadmillingEnabled (C++ member) Parameters::verifyParameters (C++ function) Parameters::vMin (C++ member) Parameters::vPlus (C++ member) Parameters::vTM (C++ member) Parameters::wallClockLimit (C++ member) Parameters::writeToFile (C++ function) Parameters::x0calc (C++ member) Parameters::z0calc (C++ member) Parameters::zipFraction (C++ member) Parameters::zipperingEnabled (C++ member) PI (C++ member) pickup_shape (C++ function), [1] PointATedge (C++ class) PointATedge::nextElement (C++ member) PointATedge::PointATedge (C++ function) PointATedge::x (C++ member) PointATedge::y (C++ member) PointATedge::z (C++ member) POSITION_CACHE_SIZE (C++ member) PROGRAM_VERSION (C macro)

Q

QUEUE_FLUSH_INTERVAL (C++ member)

R

Region (C++ class) Region::area (C++ member) Region::faceTag (C++ member) Region::geometry (C++ member) Region::getTrajectoryCoordinates (C++ function) Region::growingPlusTipList (C++ member) Region::insertTrajectory (C++ function) Region::intersectEdg (C++ member) Region::intersectionAngle (C++ function) Region::makeIntersectionList (C++ function) Region::midPoint (C++ member) Region::minusTipList (C++ member) Region::operator= (C++ function) Region::opticalLength (C++ function) Region::orientation (C++ member) Region::outputOrderHeatMap (C++ function) Region::outputSnapshot (C++ function) Region::periMeter (C++ member) Region::polyIntersectMark (C++ member) Region::previousUpdateTag (C++ member)

Region::Q (C++ member) Region::randomSurfaceVector (C++ function) Region::Region (C++ function), [1] Region::regionId (C++ member) Region::registerOnRegion (C++ function) Region::removeTrajectory (C++ function) Region::rotAngle (C++ member) Region::shrinkingPlusTipList (C++ member) Region::side (C++ member) Region::sideMap (C++ member) Region::sideRevMap (C++ member) Region::totalLength (C++ member) Region::trajectories (C++ member) Region::translateVector (C++ function) Region::unregisterFromRegion (C++ function) Region::updateRegionLength (C++ function) Region::Vertics (C++ member) Region::zOffset (C++ member) Region::~Region (C++ function) RegionMTTipTag (C++ type) rigidBodyProperties (C++ function), [1]

S

s1 (C++ member) s2 (C++ member) Segment (C++ class) Segment::crossesIntersection (C++ function) Segment::dir (C++ member) Segment::end (C++ member) Segment::endItr (C++ member) Segment::isFirstInMT (C++ function) Segment::isLastInMT (C++ function) Segment::length (C++ function) Segment::mt (C++ member) Segment::nucleationTime (C++ member) Segment::Segment (C++ function) Segment::start (C++ member) Segment::startItr (C++ member) Segment::trajectory (C++ member) Segment::trajectoryTag (C++ member) Segment::~Segment (C++ function) SEGMENT_GRANULARITY (C++ member) split (C++ function), [1] std (C++ type) StochasticEventType (C++ enum) StochasticEventType::catastrophe (C++ enumerator) StochasticEventType::katanin (C++ enumerator) StochasticEventType::nucleation (C++ enumerator) StochasticEventType::rescue (C++ enumerator) StochasticEventType::severingAtCross (C++ enumerator) SurfaceVector (C++ struct) SurfaceVector::angle (C++ member) SurfaceVector::region (C++ member) SurfaceVector::SurfaceVector (C++ function) SurfaceVector::tvPos (C++ member) SurfaceVector::x (C++ member) SurfaceVector::y (C++ member) SurfaceVector::z (C++ member) System (C++ class) System::addOccupiedIntersection (C++ function) System::advanceTime (C++ function) System::binomialTable (C++ member) System::boundaryCrossingCount (C++ member) System::closeFiles (C++ function) System::collisionProbabilities (C++ function) System::collisionResult (C++ function) System::countIntersections (C++ member) System::countSegments (C++ member) System::countTrajectories (C++ member) System::currentTimeTag (C++ member) System::dataSaved (C++ member) System::determineStochasticEvent (C++ function) System::emergencyBreak (C++ function) System::estimateMemoryFootprint (C++ function) System::EventDescriptorID (C++ member) System::EventDescriptorMap (C++ member) System::eventID (C++ member) System::flushAndReload (C++ function) System::geometry (C++ member) System::getEventDescriptor (C++ function) System::getEventTag (C++ function) System::growing_mts (C++ member)

System::growingTipsReg (C++ member) System::handleCatastropheEvent (C++ function) System::handleGlobalEvent (C++ function) System::handleNucleationEvent (C++ function) System::handleRescueEvent (C++ function) System::handleSeveringAtCrossEvent (C++ function) System::handleSeveringEvent (C++ function) System::heatMapFile (C++ member) System::identity (C++ function) System::initializeOutput (C++ function) System::integrityCheck (C++ function) System::makeBinomialTable (C++ function) System::measurementFile (C++ member) System::measurementHistory (C++ member) System::memUsage (C++ member) System::movieFile (C++ member) System::multiPcross (C++ function) System::multiPzip (C++ function) System::nextEvent (C++ function) System::nextParameterEventTime (C++ member) System::nextPPBEventTime (C++ member) System::nextSnapshotEventTime (C++ member) System::nextStatusEventTime (C++ member) System::nextStochasticEventTime (C++ member) System::nextStochasticEventType (C++ member) System::OccupiedIntersectionList (C++ member) System::operator= (C++ function) System::orderDirectorFile (C++ member) System::p (C++ member) System::parameterFile (C++ member) System::performMeasurement (C++ function) System::randomGen (C++ member) System::randomPositionOnMicrotubule (C++ function) System::registerEventDescriptor (C++ function) System::removeOccupiedIntersection (C++ function) System::run (C++ function) System::shrinking_mts (C++ member) System::stopSignal (C++ member) System::System (C++ function), [1] System::systemTime (C++ member) System::systemTimeOffset (C++ member) System::timeQueue (C++ member) System::timeToVPlus (C++ function) System::totalCrossoverCount (C++ member) System::totalInducedCatastropheCount (C++ member) System::totalIntersectionSeveringCount (C++ member) System::totalInvalidDEventCount (C++ member) System::totalLength (C++ member) System::totalLengthSeveringCount (C++ member) System::totalSEventCount (C++ member) System::totalValidDEventCount (C++ member) System::totalZipperCount (C++ member) System::unregisterEventDescriptor (C++ function) System::updateAll (C++ function) System::vPlusQueue (C++ member) System::vPlusToTime (C++ function) System::wallClockStartTime (C++ member) System::writeMeasurementsToFile (C++ function) System::~System (C++ function)

T

TipType (C++ enum) TipType::t_minus (C++ enumerator) TipType::t_plus (C++ enumerator) tql2 (C++ function) Trajectory (C++ class) Trajectory::base (C++ member) Trajectory::conditionalRemove (C++ function) Trajectory::coveredLength (C++ function) Trajectory::differenceSign (C++ function) Trajectory::endPoint (C++ member) Trajectory::insertSegment (C++ function) Trajectory::integrityCheck (C++ function) Trajectory::intersections (C++ member) Trajectory::invalidateIntersection (C++ function) Trajectory::length (C++ member) Trajectory::newIntersection (C++ function) Trajectory::nextTr (C++ member) Trajectory::nextTrajectory (C++ function) Trajectory::nextTrCosAngle (C++ member) Trajectory::nextTrpCat (C++ member) Trajectory::notificationList (C++ member) Trajectory::operator= (C++ function) Trajectory::prevTr (C++ member) Trajectory::prevTrCosAngle (C++ member) Trajectory::prevTrpCat (C++ member) Trajectory::registerForNotifications (C++ function) Trajectory::removeSegment (C++ function) Trajectory::segmentLength (C++ function) Trajectory::segments (C++ member) Trajectory::thisTr (C++ member) Trajectory::Trajectory (C++ function), [1] Trajectory::unregisterForNotifications (C++ function) Trajectory::wallBegin (C++ function) Trajectory::wallEnd (C++ function) Trajectory::~Trajectory (C++ function) TRAJECTORY_GRANULARITY (C++ member) TrajectoryVector (C++ class) TrajectoryVector::Cdir (C++ member)

TrajectoryVector::dir (C++ member) TrajectoryVector::flipped (C++ function) TrajectoryVector::pos (C++ member) TrajectoryVector::trajectory (C++ member) TrajectoryVector::TrajectoryVector (C++ function), [1] tred2 (C++ function) Triangle (C++ class) Triangle3D (C++ class) Triangle3D::area (C++ member) Triangle3D::edgAngNorm (C++ member) Triangle3D::edgeTag (C++ member) Triangle3D::elementId (C++ member) Triangle3D::faceTag (C++ member) Triangle3D::givenNormal (C++ member) Triangle3D::intersectEdg (C++ member) Triangle3D::midPoint (C++ member) Triangle3D::pcatEdgeWeight (C++ member) Triangle3D::periMeter (C++ member) Triangle3D::periodicTag (C++ member) Triangle3D::polyIntersectMark (C++ member) Triangle3D::side (C++ member) Triangle3D::sideMap (C++ member) Triangle3D::sideRevMap (C++ member) Triangle3D::sideToEdge (C++ member) Triangle3D::Triangle3D (C++ function) Triangle3D::Vertex (C++ member) Triangle3D::vertexIds (C++ member) Triangle3D::vertexIdsMap (C++ member) Triangle::getTrajectoryCoordinates (C++ function) Triangle::randomSurfaceVector (C++ function) Triangle::Triangle (C++ function) TriMeshGeometry (C++ class) TriMeshGeometry::extendTrajectory (C++ function) TriMeshGeometry::getOrderParameters (C++ function) TriMeshGeometry::outputOrderHeatMap (C++ function) TriMeshGeometry::outputSnapshot (C++ function) TriMeshGeometry::TriMeshGeometry (C++ function) TrjMTTipTag (C++ type) TrjSegmentTag (C++ type)

V

Vertics (C++ class) Vertics::Vertics (C++ function) Vertics::x (C++ member)

Vertics::y (C++ member) Vertics::z (C++ member) VERY_LARGE (C++ member) viewGraph (C++ function), [1]

W

writeMeasurementDescriptors (C++ function), [1]

Z

ZERO_CUTOFF (C++ member)